Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.72■□□□□ 0.11
APOEP02649 REXO1L2P-201ENST00000425429 2069 ntBASIC15.72■□□□□ 0.11
APOEP02649 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.72■□□□□ 0.11
APOEP02649 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
APOEP02649 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
APOEP02649 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
APOEP02649 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
APOEP02649 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.71■□□□□ 0.11
APOEP02649 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 AC007191.1-201ENST00000623179 2995 ntBASIC15.71■□□□□ 0.11
APOEP02649 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.71■□□□□ 0.11
APOEP02649 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 MIR658-201ENST00000385210 100 ntBASIC15.71■□□□□ 0.11
APOEP02649 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
APOEP02649 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.71■□□□□ 0.11
APOEP02649 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.71■□□□□ 0.11
APOEP02649 FAM197Y7-201ENST00000432892 766 ntBASIC15.71■□□□□ 0.11
APOEP02649 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 AC022210.1-201ENST00000449856 793 ntBASIC15.71■□□□□ 0.11
APOEP02649 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC15.71■□□□□ 0.11
APOEP02649 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 RNA5SP486-201ENST00000515961 83 ntBASIC15.71■□□□□ 0.11
APOEP02649 AP000812.2-201ENST00000538934 718 ntBASIC15.71■□□□□ 0.11
APOEP02649 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.71■□□□□ 0.11
APOEP02649 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.71■□□□□ 0.11
APOEP02649 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.71■□□□□ 0.11
APOEP02649 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.71■□□□□ 0.11
APOEP02649 RHOXF1P1-202ENST00000635473 501 ntBASIC15.71■□□□□ 0.11
APOEP02649 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 SNX18-202ENST00000343017 3140 ntBASIC15.71■□□□□ 0.11
APOEP02649 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOEP02649 AC005089.1-201ENST00000619486 2241 ntBASIC15.71■□□□□ 0.1
APOEP02649 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.1
APOEP02649 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
APOEP02649 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
APOEP02649 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.71■□□□□ 0.1
APOEP02649 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.7■□□□□ 0.1
APOEP02649 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.7■□□□□ 0.1
APOEP02649 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.7■□□□□ 0.1
APOEP02649 KRT223P-202ENST00000449164 1292 ntBASIC15.7■□□□□ 0.1
APOEP02649 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.7■□□□□ 0.1
APOEP02649 SNX29P1-201ENST00000548357 1007 ntBASIC15.7■□□□□ 0.1
APOEP02649 AC079316.1-201ENST00000548397 411 ntBASIC15.7■□□□□ 0.1
APOEP02649 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.7■□□□□ 0.1
APOEP02649 AL359881.2-201ENST00000602973 570 ntBASIC15.7■□□□□ 0.1
APOEP02649 MIR6775-201ENST00000617557 69 ntBASIC15.7■□□□□ 0.1
APOEP02649 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.7■□□□□ 0.1
APOEP02649 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
APOEP02649 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.7■□□□□ 0.1
APOEP02649 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.7■□□□□ 0.1
APOEP02649 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOEP02649 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms