Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.99■□□□□ 0.15
FOXN3O00409 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXN3O00409 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.99■□□□□ 0.15
FOXN3O00409 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.99■□□□□ 0.15
FOXN3O00409 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXN3O00409 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.99■□□□□ 0.15
FOXN3O00409 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXN3O00409 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXN3O00409 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.99■□□□□ 0.15
FOXN3O00409 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXN3O00409 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
FOXN3O00409 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXN3O00409 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
FOXN3O00409 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.99■□□□□ 0.15
FOXN3O00409 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
FOXN3O00409 AL136172.1-201ENST00000598590 1394 ntBASIC15.99■□□□□ 0.15
FOXN3O00409 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 AC011840.2-201ENST00000563063 1520 ntBASIC15.99■□□□□ 0.15
FOXN3O00409 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
FOXN3O00409 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 AC092135.3-201ENST00000624151 1846 ntBASIC15.98■□□□□ 0.15
FOXN3O00409 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 AC152010.1-201ENST00000415779 2006 ntBASIC15.98■□□□□ 0.15
FOXN3O00409 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXN3O00409 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXN3O00409 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXN3O00409 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXN3O00409 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.98■□□□□ 0.15
FOXN3O00409 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 RN7SL48P-201ENST00000579283 293 ntBASIC15.98■□□□□ 0.15
FOXN3O00409 GNRHR2-203ENST00000581100 1187 ntBASIC15.98■□□□□ 0.15
FOXN3O00409 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
FOXN3O00409 AC138696.2-201ENST00000607376 223 ntBASIC15.98■□□□□ 0.15
FOXN3O00409 AC138466.3-201ENST00000619983 221 ntBASIC15.98■□□□□ 0.15
FOXN3O00409 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.98■□□□□ 0.15
FOXN3O00409 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
FOXN3O00409 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
FOXN3O00409 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
FOXN3O00409 MRPL37P1-201ENST00000592451 1337 ntBASIC15.97■□□□□ 0.15
FOXN3O00409 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.97■□□□□ 0.15
FOXN3O00409 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXN3O00409 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXN3O00409 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
FOXN3O00409 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
FOXN3O00409 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.97■□□□□ 0.15
FOXN3O00409 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.97■□□□□ 0.15
FOXN3O00409 AP005018.1-201ENST00000525475 301 ntBASIC15.97■□□□□ 0.15
FOXN3O00409 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
FOXN3O00409 SLC25A47P1-201ENST00000531577 414 ntBASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms