Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 U91328.1-201ENST00000437528 223 ntBASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 AC009093.2-202ENST00000620513 2079 ntBASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 PDIA3P1-201ENST00000471856 1510 ntBASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 CNN2P8-201ENST00000421872 913 ntBASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 AP003171.2-201ENST00000528208 925 ntBASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 AC131206.1-201ENST00000538078 1211 ntBASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 AC106820.3-201ENST00000561653 397 ntBASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMC4Q9NTJ3 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 KRT17P8-201ENST00000540749 863 ntBASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC4Q9NTJ3 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms