Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 RN7SL399P-201ENST00000471648 279 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC022447.6-201ENST00000515522 438 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC135586.1-201ENST00000539323 574 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC107373.2-201ENST00000607735 490 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 BX539320.1-201ENST00000623759 877 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 ABR-228ENST00000574437 3196 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 AC023090.2-201ENST00000625182 2110 ntBASIC11.27□□□□□ -0.61
LINC00477Q96M19 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00477Q96M19 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.61
LINC00477Q96M19 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AP001267.2-201ENST00000532619 2086 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC136759.1-202ENST00000530858 2194 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 TSSK5P-201ENST00000423978 907 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AL512638.1-201ENST00000457493 794 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 FTH1-202ENST00000526640 786 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 RRP7BP-205ENST00000566851 833 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC009407.1-201ENST00000568958 598 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AL049840.4-201ENST00000602422 811 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AL691403.2-201ENST00000618460 490 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 PRSS30P-206ENST00000641773 873 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AL354702.1-201ENST00000442006 1960 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC152010.1-201ENST00000415779 2006 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 AC097359.2-201ENST00000604992 2389 ntBASIC11.26□□□□□ -0.61
LINC00477Q96M19 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 USP31-203ENST00000567975 2142 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00477Q96M19 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00477Q96M19 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00477Q96M19 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00477Q96M19 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms