Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 RN7SL837P-201ENST00000463010 287 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 AC026410.3-201ENST00000514280 936 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 ENPP7P5-201ENST00000541031 1031 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 AC124283.3-201ENST00000570869 594 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 CU634019.7-201ENST00000624153 1185 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 FP236241.2-201ENST00000624906 1185 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 MBLAC2-202ENST00000514906 1936 ntBASIC14.44□□□□□ -0.1
VMP1Q96GC9 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
VMP1Q96GC9 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
VMP1Q96GC9 AC067750.1-201ENST00000608826 6545 ntBASIC14.43□□□□□ -0.1
VMP1Q96GC9 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC084364.1-201ENST00000551967 1556 ntBASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 DRD5P1-201ENST00000456605 1438 ntBASIC14.43□□□□□ -0.1
VMP1Q96GC9 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC007389.4-201ENST00000454674 793 ntBASIC14.43□□□□□ -0.1
VMP1Q96GC9 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC093813.1-201ENST00000605066 256 ntBASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 KRT8P44-201ENST00000441609 1350 ntBASIC14.43□□□□□ -0.1
VMP1Q96GC9 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VMP1Q96GC9 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.43□□□□□ -0.1
VMP1Q96GC9 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
VMP1Q96GC9 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VMP1Q96GC9 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms