Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 AC011474.4-201ENST00000623523 2076 ntBASIC14.45□□□□□ -0.1
VPS33AQ96AX1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.45□□□□□ -0.1
VPS33AQ96AX1 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AL359881.3-201ENST00000602640 1721 ntBASIC14.44□□□□□ -0.1
VPS33AQ96AX1 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 HLA-K-203ENST00000430151 1046 ntBASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AP006288.1-201ENST00000446065 395 ntBASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 AC073592.8-201ENST00000624126 511 ntBASIC14.44□□□□□ -0.1
VPS33AQ96AX1 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
VPS33AQ96AX1 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS33AQ96AX1 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms