Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 RPSAP43-201ENST00000402237 625 ntBASIC13.35□□□□□ -0.27
RFT1Q96AA3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
RFT1Q96AA3 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.35□□□□□ -0.27
RFT1Q96AA3 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 AC211486.1-202ENST00000416371 468 ntBASIC13.34□□□□□ -0.27
RFT1Q96AA3 AC074338.1-201ENST00000416825 156 ntBASIC13.34□□□□□ -0.27
RFT1Q96AA3 GHSR-202ENST00000427970 912 ntBASIC13.34□□□□□ -0.27
RFT1Q96AA3 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 KRT18P64-201ENST00000434946 1219 ntBASIC13.34□□□□□ -0.27
RFT1Q96AA3 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 AC211476.1-201ENST00000503899 468 ntBASIC13.34□□□□□ -0.27
RFT1Q96AA3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.34□□□□□ -0.27
RFT1Q96AA3 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RFT1Q96AA3 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.34□□□□□ -0.27
RFT1Q96AA3 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RFT1Q96AA3 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
RFT1Q96AA3 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
RFT1Q96AA3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.27
RFT1Q96AA3 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.33□□□□□ -0.27
RFT1Q96AA3 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms