Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AC093214.1-201ENST00000511688 1107 ntBASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AP001582.1-201ENST00000525856 295 ntBASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 DUX4L47-201ENST00000566374 394 ntBASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AC005498.2-205ENST00000593218 784 ntBASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ATG4AQ8WYN0 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 RPL13AP25-201ENST00000484130 612 ntBASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 AC007431.3-201ENST00000623221 587 ntBASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 MST1P2-201ENST00000457982 2291 ntBASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 AC011474.4-201ENST00000623523 2076 ntBASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
ATG4AQ8WYN0 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms