Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 MIPEPP3-201ENST00000412105 444 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AL158047.1-201ENST00000445918 881 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AC097488.1-201ENST00000507834 756 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NUDT16P1-203ENST00000513809 620 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NAA38-203ENST00000575071 553 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AL023803.3-201ENST00000615559 522 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AC073592.5-201ENST00000624854 528 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 KANSL1-208ENST00000574590 5147 ntAPPRIS ALT1 TSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 TP73-AS1-210ENST00000637775 1455 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SIN3A-202ENST00000394947 6737 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 FAM95B1-212ENST00000592873 4692 ntBASIC9.25□□□□□ -0.93
LINC00643Q86TS7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 ATP2C1-221ENST00000513801 3439 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NRF1-202ENST00000311967 2481 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 KRIT1-201ENST00000340022 4553 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SEMA6A-202ENST00000343348 6878 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 FER1L6-AS1-201ENST00000518567 2315 ntTSL 2 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 CLTC-202ENST00000393043 5292 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
LINC00643Q86TS7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC002550.1-201ENST00000565916 1379 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 LINC01568-207ENST00000641790 1380 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TNS2-210ENST00000549700 4525 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 NUF2-201ENST00000271452 1969 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 PLEKHM1P1-205ENST00000582986 5014 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ATP13A2-201ENST00000326735 3840 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 MCU-204ENST00000536019 3224 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 CSAD-201ENST00000267085 2645 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ZNF286A-203ENST00000421016 5541 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 GMFB-201ENST00000358056 4301 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 WDR47-201ENST00000357672 4144 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 LINC00662-206ENST00000590523 2053 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 FER1L5-204ENST00000623019 6477 ntAPPRIS ALT2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AFF2-202ENST00000342251 7313 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TCF3-220ENST00000611869 4409 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TP53I11-203ENST00000395648 3381 ntAPPRIS P1 TSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 DLGAP2-201ENST00000421627 3165 ntAPPRIS ALT2 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 F2R-201ENST00000319211 3821 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC239809.2-201ENST00000415381 517 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 LINC00982-205ENST00000420957 435 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC097658.1-201ENST00000475555 843 ntBASIC9.24□□□□□ -0.93
LINC00643Q86TS7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC9.24□□□□□ -0.93
LINC00643Q86TS7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC9.24□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms