Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 FO681548.1-201ENST00000455617 1132 ntBASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 TPT1P11-201ENST00000458482 498 ntBASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 AC067750.1-201ENST00000608826 6545 ntBASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
ZNF549Q6P9A3 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 ACTG1P3-201ENST00000431775 1114 ntBASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 KRT18P25-201ENST00000508931 1278 ntBASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 AC009486.1-201ENST00000569860 813 ntBASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 AC117489.1-201ENST00000625169 3217 ntBASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.85□□□□□ -0.03
ZNF549Q6P9A3 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 SALL4P5-201ENST00000419001 1760 ntBASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 AC012441.1-201ENST00000446669 685 ntBASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 AC022447.6-201ENST00000515522 438 ntBASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.84□□□□□ -0.03
ZNF549Q6P9A3 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms