Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 AC015818.8-201ENST00000587907 1519 ntBASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 AP006547.1-201ENST00000563435 692 ntBASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC144BQ3MJ40 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 C1R-201ENST00000535233 2211 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 TPM3P8-201ENST00000330554 643 ntBASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 RN7SL48P-201ENST00000579283 293 ntBASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 BX640514.1-201ENST00000583223 1918 ntBASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AL354989.2-201ENST00000435838 1540 ntBASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC144BQ3MJ40 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 AC027601.5-201ENST00000624065 2482 ntBASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC144BQ3MJ40 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms