Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SALL4P5-201ENST00000419001 1760 ntBASIC13.88□□□□□ -0.19
RNF4P78317 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC13.88□□□□□ -0.19
RNF4P78317 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.88□□□□□ -0.19
RNF4P78317 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RNF4P78317 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 AP002414.2-201ENST00000591780 3365 ntBASIC13.87□□□□□ -0.19
RNF4P78317 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
RNF4P78317 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 RN7SKP230-201ENST00000365642 335 ntBASIC13.87□□□□□ -0.19
RNF4P78317 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 RN7SKP175-201ENST00000408472 289 ntBASIC13.87□□□□□ -0.19
RNF4P78317 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 AC007274.1-201ENST00000439805 662 ntBASIC13.87□□□□□ -0.19
RNF4P78317 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.87□□□□□ -0.19
RNF4P78317 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.87□□□□□ -0.19
RNF4P78317 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.87□□□□□ -0.19
RNF4P78317 AP006547.1-201ENST00000563435 692 ntBASIC13.87□□□□□ -0.19
RNF4P78317 MIR4741-201ENST00000579822 90 ntBASIC13.87□□□□□ -0.19
RNF4P78317 PPY2P-201ENST00000582808 702 ntBASIC13.87□□□□□ -0.19
RNF4P78317 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 AC009542.2-202ENST00000619004 1067 ntBASIC13.87□□□□□ -0.19
RNF4P78317 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
RNF4P78317 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.87□□□□□ -0.19
RNF4P78317 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.87□□□□□ -0.19
RNF4P78317 AC006058.4-201ENST00000624016 1670 ntBASIC13.87□□□□□ -0.19
RNF4P78317 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 DBET-201ENST00000630918 3363 ntBASIC13.87□□□□□ -0.19
RNF4P78317 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 TUBB1P2-201ENST00000422712 1306 ntBASIC13.87□□□□□ -0.19
RNF4P78317 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 TUBB1P1-201ENST00000503144 1300 ntBASIC13.87□□□□□ -0.19
RNF4P78317 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.87□□□□□ -0.19
RNF4P78317 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RNF4P78317 AC020910.5-201ENST00000623668 1865 ntBASIC13.87□□□□□ -0.19
RNF4P78317 KRT8P4-201ENST00000509735 1454 ntBASIC13.87□□□□□ -0.19
RNF4P78317 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
RNF4P78317 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
RNF4P78317 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
RNF4P78317 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
RNF4P78317 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 AC004945.1-201ENST00000416738 983 ntBASIC13.86□□□□□ -0.19
RNF4P78317 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.86□□□□□ -0.19
RNF4P78317 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.86□□□□□ -0.19
RNF4P78317 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.86□□□□□ -0.19
RNF4P78317 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
RNF4P78317 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.86□□□□□ -0.19
RNF4P78317 RN7SL560P-201ENST00000577943 264 ntBASIC13.86□□□□□ -0.19
RNF4P78317 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.86□□□□□ -0.19
RNF4P78317 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
RNF4P78317 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.86□□□□□ -0.19
RNF4P78317 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.86□□□□□ -0.19
RNF4P78317 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms