Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
UBA52P62987 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBA52P62987 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.05□□□□□ -0.32
UBA52P62987 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.05□□□□□ -0.32
UBA52P62987 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBA52P62987 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBA52P62987 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBA52P62987 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC13.05□□□□□ -0.32
UBA52P62987 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.05□□□□□ -0.32
UBA52P62987 PPT1-213ENST00000641319 2388 ntBASIC13.05□□□□□ -0.32
UBA52P62987 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBA52P62987 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 AC089987.1-201ENST00000551654 2209 ntBASIC13.04□□□□□ -0.32
UBA52P62987 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
UBA52P62987 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
UBA52P62987 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 AC044860.1-202ENST00000559481 777 ntBASIC13.04□□□□□ -0.32
UBA52P62987 WASH4P-201ENST00000564273 1246 ntBASIC13.04□□□□□ -0.32
UBA52P62987 AC132938.2-201ENST00000579188 680 ntBASIC13.04□□□□□ -0.32
UBA52P62987 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 AC007431.3-201ENST00000623221 587 ntBASIC13.04□□□□□ -0.32
UBA52P62987 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 AL591163.1-201ENST00000641757 987 ntBASIC13.04□□□□□ -0.32
UBA52P62987 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.04□□□□□ -0.32
UBA52P62987 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.04□□□□□ -0.32
UBA52P62987 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.04□□□□□ -0.32
UBA52P62987 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBA52P62987 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.03□□□□□ -0.32
UBA52P62987 AC055876.2-201ENST00000531834 546 ntBASIC13.03□□□□□ -0.32
UBA52P62987 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.03□□□□□ -0.32
UBA52P62987 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.03□□□□□ -0.32
UBA52P62987 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.03□□□□□ -0.32
UBA52P62987 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.03□□□□□ -0.32
UBA52P62987 AC024267.1-201ENST00000582320 895 ntBASIC13.03□□□□□ -0.32
UBA52P62987 CHCHD2P3-201ENST00000603038 451 ntBASIC13.03□□□□□ -0.32
UBA52P62987 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.03□□□□□ -0.32
UBA52P62987 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.03□□□□□ -0.32
UBA52P62987 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBA52P62987 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms