Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN6P56747 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN6P56747 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN6P56747 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN6P56747 AMT-239ENST00000636865 1914 ntTSL 5 BASIC14.33□□□□□ -0.11
CLDN6P56747 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CLDN6P56747 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 AP000356.3-201ENST00000382243 753 ntBASIC14.33□□□□□ -0.12
CLDN6P56747 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC14.33□□□□□ -0.12
CLDN6P56747 AL627389.1-201ENST00000413508 1182 ntBASIC14.33□□□□□ -0.12
CLDN6P56747 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.33□□□□□ -0.12
CLDN6P56747 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.33□□□□□ -0.12
CLDN6P56747 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.33□□□□□ -0.12
CLDN6P56747 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.33□□□□□ -0.12
CLDN6P56747 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 AL360270.3-201ENST00000609118 1348 ntBASIC14.33□□□□□ -0.12
CLDN6P56747 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.33□□□□□ -0.12
CLDN6P56747 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.33□□□□□ -0.12
CLDN6P56747 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CLDN6P56747 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.32□□□□□ -0.12
CLDN6P56747 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLDN6P56747 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLDN6P56747 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
CLDN6P56747 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.32□□□□□ -0.12
CLDN6P56747 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN6P56747 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.32□□□□□ -0.12
CLDN6P56747 AC132192.2-201ENST00000596206 1147 ntBASIC14.32□□□□□ -0.12
CLDN6P56747 AC138696.2-201ENST00000607376 223 ntBASIC14.32□□□□□ -0.12
CLDN6P56747 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.32□□□□□ -0.12
CLDN6P56747 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 AL008718.2-201ENST00000609206 1313 ntBASIC14.32□□□□□ -0.12
CLDN6P56747 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLDN6P56747 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.32□□□□□ -0.12
CLDN6P56747 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN6P56747 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN6P56747 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.31□□□□□ -0.12
CLDN6P56747 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLDN6P56747 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms