Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 LHX6-205ENST00000464484 666 ntTSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.6■□□□□ 0.09
CDH6P55285 AL358472.5-202ENST00000641448 1267 ntBASIC15.6■□□□□ 0.09
CDH6P55285 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
CDH6P55285 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
CDH6P55285 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
CDH6P55285 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CDH6P55285 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 AL354702.1-201ENST00000442006 1960 ntBASIC15.59■□□□□ 0.09
CDH6P55285 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH6P55285 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.59■□□□□ 0.09
CDH6P55285 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.59■□□□□ 0.09
CDH6P55285 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH6P55285 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CDH6P55285 AC004466.1-201ENST00000599515 1080 ntBASIC15.59■□□□□ 0.09
CDH6P55285 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CDH6P55285 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
CDH6P55285 SALL4P5-201ENST00000419001 1760 ntBASIC15.59■□□□□ 0.09
CDH6P55285 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CDH6P55285 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.59■□□□□ 0.09
CDH6P55285 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.59■□□□□ 0.09
CDH6P55285 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CDH6P55285 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDH6P55285 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CDH6P55285 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.58■□□□□ 0.09
CDH6P55285 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.58■□□□□ 0.09
CDH6P55285 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDH6P55285 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CDH6P55285 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CDH6P55285 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.09
CDH6P55285 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH6P55285 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CDH6P55285 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CDH6P55285 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.58■□□□□ 0.08
CDH6P55285 AC117489.1-201ENST00000625169 3217 ntBASIC15.58■□□□□ 0.08
CDH6P55285 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.58■□□□□ 0.08
CDH6P55285 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CDH6P55285 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CDH6P55285 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
CDH6P55285 FO681548.1-201ENST00000455617 1132 ntBASIC15.58■□□□□ 0.08
CDH6P55285 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CDH6P55285 AC011495.1-201ENST00000498085 584 ntBASIC15.58■□□□□ 0.08
CDH6P55285 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
CDH6P55285 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.58■□□□□ 0.08
CDH6P55285 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms