Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 DFFBP1-201ENST00000433250 979 ntBASIC15.86■□□□□ 0.13
LIG3P49916 AL353779.1-201ENST00000434793 351 ntBASIC15.86■□□□□ 0.13
LIG3P49916 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.86■□□□□ 0.13
LIG3P49916 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.86■□□□□ 0.13
LIG3P49916 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.86■□□□□ 0.13
LIG3P49916 AC093004.1-201ENST00000508850 424 ntBASIC15.86■□□□□ 0.13
LIG3P49916 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.86■□□□□ 0.13
LIG3P49916 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.86■□□□□ 0.13
LIG3P49916 TPRX2P-201ENST00000535362 881 ntBASIC15.86■□□□□ 0.13
LIG3P49916 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.86■□□□□ 0.13
LIG3P49916 SPDYE22P-201ENST00000582158 798 ntBASIC15.86■□□□□ 0.13
LIG3P49916 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.86■□□□□ 0.13
LIG3P49916 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
LIG3P49916 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.86■□□□□ 0.13
LIG3P49916 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
LIG3P49916 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
LIG3P49916 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.86■□□□□ 0.13
LIG3P49916 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.86■□□□□ 0.13
LIG3P49916 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LIG3P49916 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 AC105206.1-202ENST00000314927 2368 ntBASIC15.85■□□□□ 0.13
LIG3P49916 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 AC074338.1-201ENST00000416825 156 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.85■□□□□ 0.13
LIG3P49916 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.85■□□□□ 0.13
LIG3P49916 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 API5-211ENST00000534695 560 ntTSL 5 BASIC15.85■□□□□ 0.13
LIG3P49916 HNRNPUP1-201ENST00000554987 333 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.85■□□□□ 0.13
LIG3P49916 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 AC023310.3-201ENST00000557027 670 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AC100756.1-201ENST00000562736 682 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AC138749.3-201ENST00000567691 622 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AC116165.1-201ENST00000611806 668 ntBASIC15.85■□□□□ 0.13
LIG3P49916 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AF228730.6-201ENST00000641497 218 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AC084121.3-201ENST00000641716 218 ntBASIC15.85■□□□□ 0.13
LIG3P49916 AC105233.6-201ENST00000642093 218 ntBASIC15.85■□□□□ 0.13
LIG3P49916 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
LIG3P49916 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 AL359881.3-201ENST00000602640 1721 ntBASIC15.85■□□□□ 0.13
LIG3P49916 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
LIG3P49916 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC15.85■□□□□ 0.13
LIG3P49916 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LIG3P49916 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.85■□□□□ 0.13
LIG3P49916 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.84■□□□□ 0.13
LIG3P49916 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.84■□□□□ 0.13
LIG3P49916 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LIG3P49916 AC019294.4-201ENST00000561777 2905 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms