Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX2P35548 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.35□□□□□ -0.11
MSX2P35548 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 MTND6P24-201ENST00000440466 518 ntBASIC14.35□□□□□ -0.11
MSX2P35548 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX2P35548 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX2P35548 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX2P35548 AC083964.2-201ENST00000623988 2396 ntBASIC14.35□□□□□ -0.11
MSX2P35548 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 AL121723.1-201ENST00000445194 1519 ntBASIC14.35□□□□□ -0.11
MSX2P35548 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX2P35548 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MSX2P35548 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 MEX3B-202ENST00000558133 4333 ntBASIC14.34□□□□□ -0.11
MSX2P35548 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 KRT8P22-201ENST00000562317 1415 ntBASIC14.34□□□□□ -0.11
MSX2P35548 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 ALG1L8P-201ENST00000533887 760 ntBASIC14.34□□□□□ -0.11
MSX2P35548 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 AL662844.1-201ENST00000546340 181 ntBASIC14.34□□□□□ -0.11
MSX2P35548 SAMD11P1-201ENST00000571429 661 ntBASIC14.34□□□□□ -0.11
MSX2P35548 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.34□□□□□ -0.11
MSX2P35548 LINC01115-203ENST00000606068 577 ntBASIC14.34□□□□□ -0.11
MSX2P35548 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.34□□□□□ -0.11
MSX2P35548 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
MSX2P35548 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
MSX2P35548 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX2P35548 AL137783.1-201ENST00000623494 1896 ntBASIC14.33□□□□□ -0.11
MSX2P35548 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
MSX2P35548 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
MSX2P35548 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms