Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.76■□□□□ 0.27
CIITAP33076 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.76■□□□□ 0.27
CIITAP33076 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.76■□□□□ 0.27
CIITAP33076 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.76■□□□□ 0.27
CIITAP33076 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 AL035414.1-201ENST00000451327 857 ntBASIC16.76■□□□□ 0.27
CIITAP33076 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.76■□□□□ 0.27
CIITAP33076 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.76■□□□□ 0.27
CIITAP33076 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CIITAP33076 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.76■□□□□ 0.27
CIITAP33076 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 CICP24-201ENST00000605464 2705 ntBASIC16.76■□□□□ 0.27
CIITAP33076 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CIITAP33076 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.76■□□□□ 0.27
CIITAP33076 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CIITAP33076 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.76■□□□□ 0.27
CIITAP33076 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 AC139712.1-201ENST00000378256 1875 ntBASIC16.76■□□□□ 0.27
CIITAP33076 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 MTHFR-210ENST00000641407 2387 ntBASIC16.75■□□□□ 0.27
CIITAP33076 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CIITAP33076 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CIITAP33076 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CIITAP33076 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CIITAP33076 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CIITAP33076 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.75■□□□□ 0.27
CIITAP33076 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.75■□□□□ 0.27
CIITAP33076 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.75■□□□□ 0.27
CIITAP33076 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.75■□□□□ 0.27
CIITAP33076 AC005730.2-201ENST00000564549 1184 ntBASIC16.75■□□□□ 0.27
CIITAP33076 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 AL008638.5-201ENST00000623814 1298 ntBASIC16.75■□□□□ 0.27
CIITAP33076 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CIITAP33076 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
CIITAP33076 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
CIITAP33076 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.74■□□□□ 0.27
CIITAP33076 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.74■□□□□ 0.27
CIITAP33076 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 RN7SL219P-201ENST00000582872 296 ntBASIC16.74■□□□□ 0.27
CIITAP33076 AC005324.6-201ENST00000587972 613 ntBASIC16.74■□□□□ 0.27
CIITAP33076 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.74■□□□□ 0.27
CIITAP33076 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CIITAP33076 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CIITAP33076 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
CIITAP33076 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CIITAP33076 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.74■□□□□ 0.27
CIITAP33076 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms