Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 AC239868.1-201ENST00000369385 493 ntBASIC19.34■□□□□ 0.69
COL3A1P02461 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC19.34■□□□□ 0.69
COL3A1P02461 CEP164P1-201ENST00000455142 418 ntBASIC19.34■□□□□ 0.69
COL3A1P02461 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.34■□□□□ 0.69
COL3A1P02461 AC090857.1-201ENST00000527400 390 ntBASIC19.34■□□□□ 0.69
COL3A1P02461 STUB1-204ENST00000564370 875 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 AC020922.3-201ENST00000595064 547 ntBASIC19.34■□□□□ 0.69
COL3A1P02461 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC19.34■□□□□ 0.69
COL3A1P02461 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL3A1P02461 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC19.34■□□□□ 0.69
COL3A1P02461 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL3A1P02461 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
COL3A1P02461 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC19.33■□□□□ 0.69
COL3A1P02461 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL3A1P02461 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
COL3A1P02461 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC19.33■□□□□ 0.69
COL3A1P02461 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL3A1P02461 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
COL3A1P02461 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL3A1P02461 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC19.33■□□□□ 0.68
COL3A1P02461 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC19.33■□□□□ 0.68
COL3A1P02461 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.33■□□□□ 0.68
COL3A1P02461 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC19.33■□□□□ 0.68
COL3A1P02461 NDUFS6P1-201ENST00000485187 316 ntBASIC19.33■□□□□ 0.68
COL3A1P02461 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.33■□□□□ 0.68
COL3A1P02461 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC19.33■□□□□ 0.68
COL3A1P02461 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC19.33■□□□□ 0.68
COL3A1P02461 AC005586.2-201ENST00000563946 837 ntBASIC19.33■□□□□ 0.68
COL3A1P02461 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.33■□□□□ 0.68
COL3A1P02461 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC19.33■□□□□ 0.68
COL3A1P02461 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 HPD-204ENST00000543163 1709 ntTSL 5 BASIC19.33■□□□□ 0.68
COL3A1P02461 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 ADK-205ENST00000539909 1866 ntTSL 2 BASIC19.33■□□□□ 0.68
COL3A1P02461 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL3A1P02461 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC19.33■□□□□ 0.68
COL3A1P02461 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC19.33■□□□□ 0.68
COL3A1P02461 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
COL3A1P02461 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC19.32■□□□□ 0.68
COL3A1P02461 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 LAP3P2-201ENST00000454686 1454 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC19.32■□□□□ 0.68
COL3A1P02461 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.32■□□□□ 0.68
COL3A1P02461 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 AL662890.1-201ENST00000396818 632 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC19.32■□□□□ 0.68
COL3A1P02461 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 MIR3677-201ENST00000578964 60 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 AL109837.1-201ENST00000603272 613 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 AL353770.1-201ENST00000614915 403 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC19.32■□□□□ 0.68
COL3A1P02461 AC079336.7-201ENST00000623428 1078 ntBASIC19.32■□□□□ 0.68
COL3A1P02461 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.32■□□□□ 0.68
COL3A1P02461 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL3A1P02461 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.32■□□□□ 0.68
COL3A1P02461 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 AC106881.1-201ENST00000605849 3329 ntBASIC19.31■□□□□ 0.68
COL3A1P02461 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
COL3A1P02461 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL3A1P02461 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms