Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC21.29■■□□□ 1
MSH5O43196 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH5O43196 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 C8orf49-201ENST00000525043 1968 ntBASIC21.28■■□□□ 1
MSH5O43196 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC21.28■■□□□ 1
MSH5O43196 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC21.28■■□□□ 1
MSH5O43196 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC21.28■■□□□ 1
MSH5O43196 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC21.28■■□□□ 1
MSH5O43196 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC21.28■■□□□ 1
MSH5O43196 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC21.28■■□□□ 1
MSH5O43196 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 RPL37AP1-201ENST00000412502 279 ntBASIC21.28■■□□□ 1
MSH5O43196 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
MSH5O43196 AL353705.2-201ENST00000428243 662 ntBASIC21.28■■□□□ 1
MSH5O43196 DFFBP1-201ENST00000433250 979 ntBASIC21.28■■□□□ 1
MSH5O43196 AC006355.1-201ENST00000440982 1012 ntBASIC21.28■■□□□ 1
MSH5O43196 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC21.28■■□□□ 1
MSH5O43196 ATP5G1P3-201ENST00000463301 410 ntBASIC21.28■■□□□ 1
MSH5O43196 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC21.28■■□□□ 1
MSH5O43196 AC092552.1-201ENST00000547243 906 ntBASIC21.28■■□□□ 1
MSH5O43196 TMBIM6-225ENST00000552370 882 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
MSH5O43196 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC21.28■■□□□ 1
MSH5O43196 ZNF569-205ENST00000589833 762 ntTSL 3 BASIC21.28■■□□□ 1
MSH5O43196 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 AL844908.2-201ENST00000609461 460 ntBASIC21.28■■□□□ 1
MSH5O43196 AC003001.2-201ENST00000616294 831 ntBASIC21.28■■□□□ 1
MSH5O43196 AC083865.1-201ENST00000636634 831 ntBASIC21.28■■□□□ 1
MSH5O43196 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.28■■□□□ 1
MSH5O43196 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.28■■□□□ 1
MSH5O43196 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH5O43196 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH5O43196 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
MSH5O43196 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 AL035456.1-201ENST00000456064 1369 ntBASIC21.27■■□□□ 1
MSH5O43196 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 PRL-203ENST00000617911 1364 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
MSH5O43196 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 SPDYE19P-201ENST00000338590 713 ntBASIC21.27■■□□□ 1
MSH5O43196 RNU6-761P-201ENST00000384148 107 ntBASIC21.27■■□□□ 1
MSH5O43196 ZNF736P10Y-201ENST00000403990 1110 ntBASIC21.27■■□□□ 1
MSH5O43196 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC21.27■■□□□ 1
MSH5O43196 AC009495.1-201ENST00000428888 372 ntTSL 5 BASIC21.27■■□□□ 1
MSH5O43196 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC21.27■■□□□ 1
MSH5O43196 AC022210.1-201ENST00000449856 793 ntBASIC21.27■■□□□ 1
MSH5O43196 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
MSH5O43196 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC21.27■■□□□ 1
MSH5O43196 SNCA-207ENST00000502987 731 ntTSL 2 BASIC21.27■■□□□ 1
MSH5O43196 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC21.27■■□□□ 1
MSH5O43196 AC105185.1-201ENST00000518705 535 ntBASIC21.27■■□□□ 1
MSH5O43196 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC21.27■■□□□ 1
MSH5O43196 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC21.27■■□□□ 1
MSH5O43196 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC21.27■■□□□ 1
MSH5O43196 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
MSH5O43196 AL136520.1-202ENST00000555494 763 ntBASIC21.27■■□□□ 1
MSH5O43196 NDUFAF4P1-201ENST00000559425 519 ntBASIC21.27■■□□□ 1
MSH5O43196 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.27■■□□□ 1
MSH5O43196 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.27■■□□□ 1
MSH5O43196 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC21.27■■□□□ 1
MSH5O43196 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.27■■□□□ 1
MSH5O43196 CHCHD2P3-201ENST00000603038 451 ntBASIC21.27■■□□□ 1
MSH5O43196 LARP7P1-201ENST00000605576 316 ntBASIC21.27■■□□□ 1
MSH5O43196 AC104985.3-201ENST00000623479 597 ntBASIC21.27■■□□□ 1
MSH5O43196 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC21.27■■□□□ 1
MSH5O43196 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 ALX1-201ENST00000316824 1445 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
MSH5O43196 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH5O43196 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.27■□□□□ 0.99
MSH5O43196 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
MSH5O43196 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC21.27■□□□□ 0.99
MSH5O43196 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.27■□□□□ 0.99
MSH5O43196 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH5O43196 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
MSH5O43196 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
MSH5O43196 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
MSH5O43196 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH5O43196 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH5O43196 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
MSH5O43196 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH5O43196 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH5O43196 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH5O43196 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH5O43196 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms