Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
RHBDD3Q9Y3P4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC004066.1-201ENST00000502488 802 ntBASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 GAPDHP40-201ENST00000505218 1006 ntBASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC104581.4-201ENST00000623126 3052 ntBASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 LILRP1-201ENST00000444199 1370 ntBASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 AC131212.3-201ENST00000624087 4219 ntBASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RHBDD3Q9Y3P4 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
RHBDD3Q9Y3P4 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms