Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AC098850.1-201ENST00000419919 790 ntBASIC14.62□□□□□ -0.07
VPS4AQ9UN37 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 CTBP2P5-201ENST00000454986 1264 ntBASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AC025048.3-201ENST00000590609 569 ntBASIC14.62□□□□□ -0.07
VPS4AQ9UN37 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AC005702.4-201ENST00000618393 416 ntBASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS4AQ9UN37 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AL359258.3-201ENST00000622910 2331 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC018665.1-201ENST00000622927 1362 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AL137784.3-201ENST00000623858 2288 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC092506.1-202ENST00000401022 528 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 MIR1908-201ENST00000410394 80 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC004945.1-201ENST00000416738 983 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 FAM21FP-201ENST00000426241 1131 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 KRT18P64-201ENST00000434946 1219 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AL583810.1-201ENST00000553344 1045 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AP000845.1-201ENST00000581677 2131 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC233724.13-201ENST00000598383 410 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 AC244093.1-201ENST00000610837 814 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.61□□□□□ -0.07
VPS4AQ9UN37 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS4AQ9UN37 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms