Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRIM54Q9BYV2 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AL162726.2-201ENST00000438986 1017 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AC124283.3-201ENST00000570869 594 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AC140912.1-201ENST00000577171 1054 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 SPDYE22P-201ENST00000582158 798 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AL603764.1-201ENST00000636452 321 ntBASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.85□□□□□ -0.03
TRIM54Q9BYV2 AL137783.1-201ENST00000623494 1896 ntBASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 INTS4P1-203ENST00000641008 3683 ntBASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 HLA-K-203ENST00000430151 1046 ntBASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 AC022616.1-201ENST00000518688 554 ntBASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 API5-211ENST00000534695 560 ntTSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 BX640514.1-201ENST00000583223 1918 ntBASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.84□□□□□ -0.03
TRIM54Q9BYV2 KRT8P14-201ENST00000414254 1442 ntBASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms