Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC011474.4-201ENST00000623523 2076 ntBASIC16.22■□□□□ 0.19
CCDC42Q96M95 DRD5P1-201ENST00000456605 1438 ntBASIC16.22■□□□□ 0.19
CCDC42Q96M95 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AL138799.1-201ENST00000448213 1675 ntBASIC16.22■□□□□ 0.19
CCDC42Q96M95 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC092865.5-201ENST00000545435 363 ntBASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 AC004449.1-201ENST00000564240 433 ntBASIC16.21■□□□□ 0.19
CCDC42Q96M95 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CCDC42Q96M95 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.21■□□□□ 0.19
CCDC42Q96M95 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.21■□□□□ 0.18
CCDC42Q96M95 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC100757.3-201ENST00000622361 1406 ntBASIC16.2■□□□□ 0.18
CCDC42Q96M95 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
CCDC42Q96M95 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC42Q96M95 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms