Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
ATG4AQ8WYN0 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 RNU1-114P-201ENST00000365297 166 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AL139094.1-201ENST00000405549 1188 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 BRI3BPP1-201ENST00000594224 787 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 BX539320.1-201ENST00000623759 877 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 PRSS30P-206ENST00000641773 873 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 INTS4P2-202ENST00000614726 2019 ntBASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ATG4AQ8WYN0 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 AL512638.1-201ENST00000457493 794 ntBASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 AC026434.2-201ENST00000506094 1078 ntBASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 AC120045.2-201ENST00000567334 178 ntBASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 AC093813.1-201ENST00000605066 256 ntBASIC15.55■□□□□ 0.08
ATG4AQ8WYN0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms