Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AC140479.7-201ENST00000636301 2332 ntBASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AC139749.1-202ENST00000617529 3139 ntBASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AC100850.1-201ENST00000506768 649 ntBASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AC131206.1-201ENST00000538078 1211 ntBASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 AC018735.1-201ENST00000437208 1502 ntBASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX2-3Q8TAU0 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 Z97180.1-201ENST00000445173 988 ntBASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX2-3Q8TAU0 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 AC016700.1-201ENST00000429424 312 ntBASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX2-3Q8TAU0 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms