Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 CICP23-201ENST00000605013 2741 ntBASIC13.91□□□□□ -0.18
NUP54Q7Z3B4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 AJ011931.1-201ENST00000618749 2492 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 OR8S1-201ENST00000310194 1080 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 GK-202ENST00000378941 458 ntTSL 3 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CNN2P8-201ENST00000421872 913 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 AC245100.3-201ENST00000441281 285 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 KLF2P4-201ENST00000451959 1225 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CROCCP4-201ENST00000457096 498 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 AP000812.2-201ENST00000538934 718 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 LINC00528-201ENST00000600723 2160 ntBASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
NUP54Q7Z3B4 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
NUP54Q7Z3B4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
NUP54Q7Z3B4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.9□□□□□ -0.19
NUP54Q7Z3B4 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.9□□□□□ -0.19
NUP54Q7Z3B4 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 CD8B2-202ENST00000417670 633 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ARSEP1-201ENST00000420443 635 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 RPL7P3-201ENST00000441388 714 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC026434.2-201ENST00000506094 1078 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC104989.1-201ENST00000519711 778 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC079316.1-201ENST00000548397 411 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC017083.2-201ENST00000608069 979 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 AC244669.2-201ENST00000612320 853 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 PDIA3P1-201ENST00000471856 1510 ntBASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms