Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 INTS4P1-203ENST00000641008 3683 ntBASIC14.22□□□□□ -0.13
LIM2P55344 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LIM2P55344 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
LIM2P55344 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.22□□□□□ -0.13
LIM2P55344 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 TPM3P8-201ENST00000330554 643 ntBASIC14.22□□□□□ -0.13
LIM2P55344 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.22□□□□□ -0.13
LIM2P55344 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.22□□□□□ -0.13
LIM2P55344 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
LIM2P55344 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
LIM2P55344 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.22□□□□□ -0.13
LIM2P55344 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.22□□□□□ -0.13
LIM2P55344 RNA5SP486-201ENST00000515961 83 ntBASIC14.22□□□□□ -0.13
LIM2P55344 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.22□□□□□ -0.13
LIM2P55344 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.22□□□□□ -0.13
LIM2P55344 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.22□□□□□ -0.13
LIM2P55344 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.22□□□□□ -0.13
LIM2P55344 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LIM2P55344 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.22□□□□□ -0.13
LIM2P55344 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LIM2P55344 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
LIM2P55344 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
LIM2P55344 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
LIM2P55344 CLUHP2-201ENST00000426660 1303 ntBASIC14.21□□□□□ -0.13
LIM2P55344 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.21□□□□□ -0.13
LIM2P55344 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.21□□□□□ -0.13
LIM2P55344 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
LIM2P55344 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 AC112492.5-201ENST00000421897 457 ntBASIC14.21□□□□□ -0.13
LIM2P55344 FAM197Y7-201ENST00000432892 766 ntBASIC14.21□□□□□ -0.13
LIM2P55344 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 KRT90P-201ENST00000549264 1064 ntBASIC14.21□□□□□ -0.13
LIM2P55344 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.21□□□□□ -0.13
LIM2P55344 ECM1P1-201ENST00000604092 1279 ntBASIC14.21□□□□□ -0.13
LIM2P55344 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
LIM2P55344 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
LIM2P55344 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
LIM2P55344 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LIM2P55344 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LIM2P55344 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.21□□□□□ -0.14
LIM2P55344 BX640514.1-201ENST00000583223 1918 ntBASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms