Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
MSH6P52701 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.32■□□□□ 0.84
MSH6P52701 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MSH6P52701 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
MSH6P52701 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
MSH6P52701 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
MSH6P52701 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH6P52701 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC20.31■□□□□ 0.84
MSH6P52701 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 AC018638.5-201ENST00000450885 754 ntBASIC20.31■□□□□ 0.84
MSH6P52701 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC20.31■□□□□ 0.84
MSH6P52701 TREHP1-201ENST00000531328 465 ntBASIC20.31■□□□□ 0.84
MSH6P52701 CYP4F36P-201ENST00000589193 186 ntBASIC20.31■□□□□ 0.84
MSH6P52701 TP53-221ENST00000615910 1149 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH6P52701 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MSH6P52701 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.31■□□□□ 0.84
MSH6P52701 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.31■□□□□ 0.84
MSH6P52701 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH6P52701 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 REXO1L2P-201ENST00000425429 2069 ntBASIC20.3■□□□□ 0.84
MSH6P52701 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH6P52701 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC20.3■□□□□ 0.84
MSH6P52701 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 AC004522.1-201ENST00000419978 654 ntBASIC20.3■□□□□ 0.84
MSH6P52701 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 RN7SL277P-201ENST00000481521 288 ntBASIC20.3■□□□□ 0.84
MSH6P52701 RN7SL582P-201ENST00000491078 279 ntBASIC20.3■□□□□ 0.84
MSH6P52701 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC20.3■□□□□ 0.84
MSH6P52701 RN7SL665P-201ENST00000578793 300 ntBASIC20.3■□□□□ 0.84
MSH6P52701 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH6P52701 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
MSH6P52701 MVK-217ENST00000639206 367 ntTSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC20.3■□□□□ 0.84
MSH6P52701 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MSH6P52701 AC006372.4-201ENST00000624122 1543 ntBASIC20.3■□□□□ 0.84
MSH6P52701 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
MSH6P52701 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH6P52701 AL136172.1-201ENST00000598590 1394 ntBASIC20.29■□□□□ 0.84
MSH6P52701 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 F11R-206ENST00000621309 4770 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH6P52701 PYY2-201ENST00000315776 282 ntBASIC20.29■□□□□ 0.84
MSH6P52701 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH6P52701 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC20.29■□□□□ 0.84
MSH6P52701 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MSH6P52701 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC20.29■□□□□ 0.84
MSH6P52701 ST5-261ENST00000626808 1071 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MSH6P52701 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MSH6P52701 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MSH6P52701 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms