Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
CLCN3P51790 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLCN3P51790 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.37■□□□□ 0.21
CLCN3P51790 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CLCN3P51790 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLCN3P51790 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CLCN3P51790 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.36■□□□□ 0.21
CLCN3P51790 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.36■□□□□ 0.21
CLCN3P51790 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.36■□□□□ 0.21
CLCN3P51790 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.36■□□□□ 0.21
CLCN3P51790 PUDPP3-201ENST00000445368 636 ntBASIC16.36■□□□□ 0.21
CLCN3P51790 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC16.36■□□□□ 0.21
CLCN3P51790 CSH2-206ENST00000560142 749 ntTSL 5 BASIC16.36■□□□□ 0.21
CLCN3P51790 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
CLCN3P51790 AC090164.2-201ENST00000611487 516 ntBASIC16.36■□□□□ 0.21
CLCN3P51790 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC16.36■□□□□ 0.21
CLCN3P51790 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.36■□□□□ 0.21
CLCN3P51790 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.36■□□□□ 0.21
CLCN3P51790 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.36■□□□□ 0.21
CLCN3P51790 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CLCN3P51790 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.36■□□□□ 0.21
CLCN3P51790 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CLCN3P51790 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 MBLAC2-202ENST00000514906 1936 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCN3P51790 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
CLCN3P51790 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCN3P51790 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.35■□□□□ 0.21
CLCN3P51790 OARD1-204ENST00000464633 717 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.35■□□□□ 0.21
CLCN3P51790 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.35■□□□□ 0.21
CLCN3P51790 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.35■□□□□ 0.21
CLCN3P51790 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 AC005962.1-201ENST00000584100 773 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.35■□□□□ 0.21
CLCN3P51790 AC026740.1-201ENST00000607068 791 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 MIR6720-201ENST00000611664 98 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
CLCN3P51790 Z98259.2-201ENST00000641583 609 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 TUBBP5-203ENST00000508529 1334 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 AL008718.2-201ENST00000609206 1313 ntBASIC16.35■□□□□ 0.21
CLCN3P51790 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.35■□□□□ 0.21
CLCN3P51790 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCN3P51790 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.35■□□□□ 0.21
CLCN3P51790 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLCN3P51790 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCN3P51790 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLCN3P51790 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLCN3P51790 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCN3P51790 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCN3P51790 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCN3P51790 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCN3P51790 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLCN3P51790 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms