Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TPM1P09493 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
TPM1P09493 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM1P09493 AC004461.1-201ENST00000412461 403 ntBASIC16.6■□□□□ 0.25
TPM1P09493 AL080243.2-201ENST00000418783 582 ntBASIC16.6■□□□□ 0.25
TPM1P09493 GPS2P2-201ENST00000430745 888 ntBASIC16.6■□□□□ 0.25
TPM1P09493 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM1P09493 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.6■□□□□ 0.25
TPM1P09493 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.6■□□□□ 0.25
TPM1P09493 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 AC022447.6-201ENST00000515522 438 ntBASIC16.6■□□□□ 0.25
TPM1P09493 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.6■□□□□ 0.25
TPM1P09493 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TPM1P09493 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 AC074044.1-201ENST00000609673 707 ntBASIC16.6■□□□□ 0.25
TPM1P09493 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.6■□□□□ 0.25
TPM1P09493 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.6■□□□□ 0.25
TPM1P09493 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.6■□□□□ 0.25
TPM1P09493 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
TPM1P09493 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
TPM1P09493 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.6■□□□□ 0.25
TPM1P09493 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TPM1P09493 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
TPM1P09493 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
TPM1P09493 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.59■□□□□ 0.25
TPM1P09493 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 AP000344.2-201ENST00000512987 629 ntBASIC16.59■□□□□ 0.25
TPM1P09493 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TPM1P09493 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 AC004835.2-201ENST00000603762 682 ntBASIC16.59■□□□□ 0.25
TPM1P09493 AL360270.3-201ENST00000609118 1348 ntBASIC16.59■□□□□ 0.25
TPM1P09493 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.59■□□□□ 0.25
TPM1P09493 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TPM1P09493 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.59■□□□□ 0.25
TPM1P09493 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 FP325330.2-201ENST00000624219 5630 ntBASIC16.59■□□□□ 0.25
TPM1P09493 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TPM1P09493 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM1P09493 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
TPM1P09493 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.58■□□□□ 0.25
TPM1P09493 MST1P2-201ENST00000457982 2291 ntBASIC16.58■□□□□ 0.25
TPM1P09493 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM1P09493 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TPM1P09493 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
TPM1P09493 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.58■□□□□ 0.24
TPM1P09493 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TPM1P09493 DNAJB3-201ENST00000446806 729 ntBASIC16.58■□□□□ 0.24
TPM1P09493 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.58■□□□□ 0.24
TPM1P09493 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms