Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 AL031595.1-201ENST00000623969 4709 ntBASIC11.66□□□□□ -0.54
CXCL1P09341 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CXCL1P09341 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC11.66□□□□□ -0.54
CXCL1P09341 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
CXCL1P09341 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC11.66□□□□□ -0.54
CXCL1P09341 RPS8P6-201ENST00000426177 609 ntBASIC11.66□□□□□ -0.54
CXCL1P09341 RHOQP3-201ENST00000437982 621 ntBASIC11.66□□□□□ -0.54
CXCL1P09341 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC11.66□□□□□ -0.54
CXCL1P09341 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 TBCB-205ENST00000585746 875 ntTSL 3 BASIC11.66□□□□□ -0.54
CXCL1P09341 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CXCL1P09341 AC117500.6-201ENST00000624871 588 ntBASIC11.66□□□□□ -0.54
CXCL1P09341 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC11.66□□□□□ -0.54
CXCL1P09341 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.66□□□□□ -0.54
CXCL1P09341 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
CXCL1P09341 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 AC072061.1-201ENST00000569710 2234 ntBASIC11.66□□□□□ -0.54
CXCL1P09341 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CXCL1P09341 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC11.65□□□□□ -0.54
CXCL1P09341 MX1-218ENST00000619682 1980 ntTSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC11.65□□□□□ -0.54
CXCL1P09341 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC11.65□□□□□ -0.54
CXCL1P09341 IGLL3P-201ENST00000412472 434 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 GHSR-202ENST00000427970 912 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC11.65□□□□□ -0.54
CXCL1P09341 HCG4P8-203ENST00000443049 980 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 EEF1DP4-201ENST00000446006 880 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 AF186996.4-201ENST00000467186 377 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
CXCL1P09341 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
CXCL1P09341 BMF-207ENST00000559701 630 ntTSL 3 BASIC11.65□□□□□ -0.54
CXCL1P09341 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC11.65□□□□□ -0.54
CXCL1P09341 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC11.65□□□□□ -0.54
CXCL1P09341 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC11.65□□□□□ -0.54
CXCL1P09341 CD7-202ENST00000578509 925 ntTSL 3 BASIC11.65□□□□□ -0.54
CXCL1P09341 AC061975.2-201ENST00000581722 295 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC11.65□□□□□ -0.54
CXCL1P09341 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 AL450472.2-201ENST00000603663 1156 ntBASIC11.65□□□□□ -0.54
CXCL1P09341 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC11.65□□□□□ -0.54
CXCL1P09341 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC11.65□□□□□ -0.54
CXCL1P09341 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
CXCL1P09341 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CXCL1P09341 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC11.65□□□□□ -0.55
CXCL1P09341 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC11.65□□□□□ -0.55
CXCL1P09341 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms