Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.68□□□□□ -0.22
HOXD4P09016 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXD4P09016 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 PID1-202ENST00000392054 2745 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXD4P09016 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXD4P09016 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
HOXD4P09016 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 KRT8P14-201ENST00000414254 1442 ntBASIC13.67□□□□□ -0.22
HOXD4P09016 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 RNU1-114P-201ENST00000365297 166 ntBASIC13.67□□□□□ -0.22
HOXD4P09016 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 AC006033.1-201ENST00000440505 426 ntBASIC13.67□□□□□ -0.22
HOXD4P09016 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.67□□□□□ -0.22
HOXD4P09016 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.67□□□□□ -0.22
HOXD4P09016 CICP17-201ENST00000418553 2377 ntBASIC13.67□□□□□ -0.22
HOXD4P09016 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 AC027601.5-201ENST00000624065 2482 ntBASIC13.67□□□□□ -0.22
HOXD4P09016 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXD4P09016 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXD4P09016 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXD4P09016 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
HOXD4P09016 AL109954.1-202ENST00000564051 2148 ntBASIC13.66□□□□□ -0.22
HOXD4P09016 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXD4P09016 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXD4P09016 BTBD6P1-201ENST00000412176 1267 ntBASIC13.66□□□□□ -0.22
HOXD4P09016 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXD4P09016 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.66□□□□□ -0.22
HOXD4P09016 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms