Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 VDAC1P1-201ENST00000439229 848 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 HLA-J-204ENST00000495278 958 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 RNA5SP423-201ENST00000517127 109 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 AL132994.2-201ENST00000603120 687 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 Z98259.2-201ENST00000641583 609 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 MBLAC2-202ENST00000514906 1936 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 AL109954.1-202ENST00000564051 2148 ntBASIC17.54■□□□□ 0.4
HLA-DOAP06340 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HLA-DOAP06340 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DOAP06340 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 AC008132.1-202ENST00000342005 1389 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 ACE3P-201ENST00000423435 1973 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 ACTG1P2-201ENST00000415776 1125 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 ACTG1P11-201ENST00000425411 1125 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 MSRA-203ENST00000441698 788 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 RCC2P8-201ENST00000502779 1035 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 AC024681.1-201ENST00000521917 487 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 CHMP4BP1-201ENST00000556017 588 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 AL160314.3-201ENST00000556041 767 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 AC132872.4-202ENST00000622924 2756 ntBASIC17.53■□□□□ 0.4
HLA-DOAP06340 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HLA-DOAP06340 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HLA-DOAP06340 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.52■□□□□ 0.4
HLA-DOAP06340 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.52■□□□□ 0.4
HLA-DOAP06340 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HLA-DOAP06340 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC17.52■□□□□ 0.4
HLA-DOAP06340 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC17.52■□□□□ 0.4
HLA-DOAP06340 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 RN7SKP214-201ENST00000364208 315 ntBASIC17.52■□□□□ 0.4
HLA-DOAP06340 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HLA-DOAP06340 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms