Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 CNN2P8-201ENST00000421872 913 ntBASIC14.12□□□□□ -0.15
LDB3O75112 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 CTBP2P5-201ENST00000454986 1264 ntBASIC14.12□□□□□ -0.15
LDB3O75112 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.12□□□□□ -0.15
LDB3O75112 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.12□□□□□ -0.15
LDB3O75112 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 SNX29P1-201ENST00000548357 1007 ntBASIC14.12□□□□□ -0.15
LDB3O75112 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.12□□□□□ -0.15
LDB3O75112 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.12□□□□□ -0.15
LDB3O75112 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
LDB3O75112 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
LDB3O75112 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
LDB3O75112 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
LDB3O75112 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LDB3O75112 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 OR2I1P-210ENST00000642037 4691 ntBASIC14.11□□□□□ -0.15
LDB3O75112 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.11□□□□□ -0.15
LDB3O75112 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 ANKRD19P-201ENST00000338192 862 ntBASIC14.11□□□□□ -0.15
LDB3O75112 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
LDB3O75112 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 BOLA2P3-201ENST00000404566 256 ntBASIC14.11□□□□□ -0.15
LDB3O75112 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 MIR1909-201ENST00000411312 80 ntBASIC14.11□□□□□ -0.15
LDB3O75112 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
LDB3O75112 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 KLF2P4-201ENST00000451959 1225 ntBASIC14.11□□□□□ -0.15
LDB3O75112 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
LDB3O75112 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.11□□□□□ -0.15
LDB3O75112 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 INE2-201ENST00000630399 1874 ntBASIC14.11□□□□□ -0.15
LDB3O75112 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 OR2I1P-209ENST00000641730 5365 ntBASIC14.11□□□□□ -0.15
LDB3O75112 SALL4P5-201ENST00000419001 1760 ntBASIC14.11□□□□□ -0.15
LDB3O75112 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
LDB3O75112 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LDB3O75112 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
LDB3O75112 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.11□□□□□ -0.15
LDB3O75112 AL354989.2-201ENST00000435838 1540 ntBASIC14.1□□□□□ -0.15
LDB3O75112 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LDB3O75112 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.1□□□□□ -0.15
LDB3O75112 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms