Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SHOX2O60902 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15□□□□□ -0.01
SHOX2O60902 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 TARDBPP1-201ENST00000442013 1203 ntBASIC15□□□□□ -0.01
SHOX2O60902 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15□□□□□ -0.01
SHOX2O60902 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
SHOX2O60902 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
SHOX2O60902 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15□□□□□ -0.01
SHOX2O60902 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 AL161645.1-201ENST00000622716 1255 ntBASIC15□□□□□ -0.01
SHOX2O60902 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15□□□□□ -0.01
SHOX2O60902 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 MARK2P9-201ENST00000430958 1727 ntBASIC15□□□□□ -0.01
SHOX2O60902 AL157414.3-201ENST00000624276 1954 ntBASIC15□□□□□ -0.01
SHOX2O60902 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15□□□□□ -0.01
SHOX2O60902 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
SHOX2O60902 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
SHOX2O60902 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SHOX2O60902 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 CARS-214ENST00000529772 2637 ntTSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 BX324167.2-201ENST00000623717 3316 ntBASIC14.99□□□□□ -0.01
SHOX2O60902 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
SHOX2O60902 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC14.99□□□□□ -0.01
SHOX2O60902 AC142381.1-201ENST00000426099 345 ntBASIC14.99□□□□□ -0.01
SHOX2O60902 VN2R19P-201ENST00000442399 1052 ntBASIC14.99□□□□□ -0.01
SHOX2O60902 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC14.99□□□□□ -0.01
SHOX2O60902 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC14.99□□□□□ -0.01
SHOX2O60902 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.99□□□□□ -0.01
SHOX2O60902 SAMD11P1-201ENST00000571429 661 ntBASIC14.99□□□□□ -0.01
SHOX2O60902 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.99□□□□□ -0.01
SHOX2O60902 AL031008.1-201ENST00000619963 541 ntBASIC14.99□□□□□ -0.01
SHOX2O60902 AC010507.1-201ENST00000633895 436 ntBASIC14.99□□□□□ -0.01
SHOX2O60902 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.99□□□□□ -0.01
SHOX2O60902 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC14.99□□□□□ -0.01
SHOX2O60902 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
SHOX2O60902 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC14.98□□□□□ -0.01
SHOX2O60902 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
SHOX2O60902 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
SHOX2O60902 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms