Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AP001063.1-201ENST00000568332 529 ntBASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 RN7SL204P-201ENST00000582831 262 ntBASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS29Q9UBQ0 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 MIR661-201ENST00000384842 89 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 ACTBP8-201ENST00000403258 1108 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 EIF3FP3-201ENST00000434851 1086 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AL162726.2-201ENST00000438986 1017 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 BCRP1-201ENST00000444246 691 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 KRT18P25-201ENST00000508931 1278 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 SPCS2P1-201ENST00000561636 679 ntBASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VPS29Q9UBQ0 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS29Q9UBQ0 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms