Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AP001258.2-201ENST00000529891 490 ntBASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AL096828.3-201ENST00000615354 462 ntBASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AC027601.3-201ENST00000622907 509 ntBASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 AL008638.5-201ENST00000623814 1298 ntBASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 KRT8P29-201ENST00000420409 1371 ntBASIC19.06■□□□□ 0.64
CHMP4AQ9BY43 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AC012441.2-201ENST00000444843 739 ntBASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AC108725.1-201ENST00000495472 409 ntBASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 MIR4525-201ENST00000580000 75 ntBASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AC005695.3-201ENST00000614522 232 ntBASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AC020907.1-201ENST00000616460 1350 ntBASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
CHMP4AQ9BY43 AC092135.3-201ENST00000624151 1846 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 MYO15B-237ENST00000642007 4893 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC104306.2-201ENST00000451877 341 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 KRT8P13-201ENST00000463294 1010 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC100827.2-201ENST00000563214 1194 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC009884.2-201ENST00000603110 324 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 AC007663.3-201ENST00000609632 465 ntBASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHMP4AQ9BY43 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms