Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AP002353.1-201ENST00000528257 1599 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 AC067931.2-201ENST00000623655 2003 ntBASIC14.41□□□□□ -0.1
VPS13AQ96RL7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
VPS13AQ96RL7 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC092570.1-201ENST00000414446 469 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC018638.5-201ENST00000450885 754 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 RN7SL582P-201ENST00000491078 279 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 KRT18P37-201ENST00000520711 1282 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 OR5BD1P-201ENST00000532527 817 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC068831.5-201ENST00000557387 328 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 RN7SL357P-201ENST00000581065 298 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC027601.3-201ENST00000622907 509 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 OR2A1-AS1-210ENST00000496968 531 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AD000864.1-201ENST00000624076 2295 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 MIR648-201ENST00000385046 94 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 SLC25A15P1-201ENST00000456738 342 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 SLC25A15P3-201ENST00000505530 290 ntBASIC14.4□□□□□ -0.1
VPS13AQ96RL7 PHF23-213ENST00000613632 850 ntTSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
VPS13AQ96RL7 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.11
VPS13AQ96RL7 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AL591122.2-201ENST00000624125 1853 ntBASIC14.39□□□□□ -0.11
VPS13AQ96RL7 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 PGAM1P11-201ENST00000416729 680 ntBASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VPS13AQ96RL7 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VPS13AQ96RL7 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms