Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 AC244394.1-201ENST00000435000 1665 ntBASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CCDC60Q8IWA6 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 DPM3-202ENST00000368399 517 ntBASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 AC016700.1-201ENST00000429424 312 ntBASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 PUDPP3-201ENST00000445368 636 ntBASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 CICP12-201ENST00000455801 843 ntBASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 AC005324.6-201ENST00000587972 613 ntBASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 PCBP2-OT1-201ENST00000634357 590 ntBASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CCDC60Q8IWA6 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 AC004899.1-201ENST00000424687 1714 ntBASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 TUBB8P8-201ENST00000458717 1058 ntBASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CCDC60Q8IWA6 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms