Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
USP54Q70EL1 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 AC023157.3-201ENST00000619086 2088 ntBASIC19.29■□□□□ 0.68
USP54Q70EL1 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 RNVU1-8-201ENST00000364272 125 ntBASIC19.29■□□□□ 0.68
USP54Q70EL1 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 BX679664.3-201ENST00000414070 555 ntBASIC19.29■□□□□ 0.68
USP54Q70EL1 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC19.29■□□□□ 0.68
USP54Q70EL1 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
USP54Q70EL1 AC113935.1-201ENST00000471722 555 ntBASIC19.29■□□□□ 0.68
USP54Q70EL1 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 RN7SL455P-201ENST00000580629 282 ntBASIC19.29■□□□□ 0.68
USP54Q70EL1 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
USP54Q70EL1 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC19.29■□□□□ 0.68
USP54Q70EL1 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.29■□□□□ 0.68
USP54Q70EL1 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
USP54Q70EL1 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USP54Q70EL1 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
USP54Q70EL1 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
USP54Q70EL1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC19.28■□□□□ 0.68
USP54Q70EL1 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
USP54Q70EL1 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.28■□□□□ 0.68
USP54Q70EL1 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 RN7SL788P-201ENST00000460504 316 ntBASIC19.28■□□□□ 0.68
USP54Q70EL1 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC19.28■□□□□ 0.68
USP54Q70EL1 ALG1L6P-201ENST00000515248 758 ntBASIC19.28■□□□□ 0.68
USP54Q70EL1 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC19.28■□□□□ 0.68
USP54Q70EL1 AC141586.1-203ENST00000567242 366 ntBASIC19.28■□□□□ 0.68
USP54Q70EL1 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC19.28■□□□□ 0.68
USP54Q70EL1 RN7SL357P-201ENST00000581065 298 ntBASIC19.28■□□□□ 0.68
USP54Q70EL1 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC19.28■□□□□ 0.68
USP54Q70EL1 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC19.28■□□□□ 0.68
USP54Q70EL1 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC19.28■□□□□ 0.68
USP54Q70EL1 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
USP54Q70EL1 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
USP54Q70EL1 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
USP54Q70EL1 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
USP54Q70EL1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
USP54Q70EL1 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
USP54Q70EL1 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC19.27■□□□□ 0.68
USP54Q70EL1 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC19.27■□□□□ 0.68
USP54Q70EL1 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 CSNK1G2P1-201ENST00000442675 955 ntBASIC19.27■□□□□ 0.68
USP54Q70EL1 AL022344.2-201ENST00000568976 968 ntBASIC19.27■□□□□ 0.68
USP54Q70EL1 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
USP54Q70EL1 AC007250.1-201ENST00000608934 338 ntBASIC19.27■□□□□ 0.68
USP54Q70EL1 AC009084.3-201ENST00000623356 437 ntBASIC19.27■□□□□ 0.68
USP54Q70EL1 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.27■□□□□ 0.68
USP54Q70EL1 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
USP54Q70EL1 AC008894.3-201ENST00000624324 3103 ntBASIC19.27■□□□□ 0.67
USP54Q70EL1 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC19.27■□□□□ 0.67
USP54Q70EL1 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 AC108734.2-201ENST00000420887 1069 ntBASIC19.27■□□□□ 0.67
USP54Q70EL1 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC19.27■□□□□ 0.67
USP54Q70EL1 AC006529.1-201ENST00000459978 637 ntBASIC19.27■□□□□ 0.67
USP54Q70EL1 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
USP54Q70EL1 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
USP54Q70EL1 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC19.26■□□□□ 0.67
USP54Q70EL1 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
USP54Q70EL1 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 AC215219.1-201ENST00000400706 1817 ntBASIC19.26■□□□□ 0.67
USP54Q70EL1 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
USP54Q70EL1 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms