Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 AC092474.2-201ENST00000424288 719 ntBASIC10.64□□□□□ -0.71
CKS1BP61024 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC10.64□□□□□ -0.71
CKS1BP61024 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC10.64□□□□□ -0.71
CKS1BP61024 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC10.64□□□□□ -0.71
CKS1BP61024 TBCB-205ENST00000585746 875 ntTSL 3 BASIC10.64□□□□□ -0.71
CKS1BP61024 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC10.64□□□□□ -0.71
CKS1BP61024 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 ILDR1-201ENST00000273691 2659 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 CICP7-201ENST00000432723 2477 ntBASIC10.64□□□□□ -0.71
CKS1BP61024 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 PER1-211ENST00000581082 4521 ntTSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
CKS1BP61024 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 AC010536.1-201ENST00000538868 2611 ntBASIC10.63□□□□□ -0.71
CKS1BP61024 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 AC148477.4-201ENST00000613430 1793 ntBASIC10.63□□□□□ -0.71
CKS1BP61024 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
CKS1BP61024 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC10.63□□□□□ -0.71
CKS1BP61024 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC10.63□□□□□ -0.71
CKS1BP61024 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC10.63□□□□□ -0.71
CKS1BP61024 RPL28-209ENST00000560055 670 ntTSL 3 BASIC10.63□□□□□ -0.71
CKS1BP61024 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC10.63□□□□□ -0.71
CKS1BP61024 AC012640.2-201ENST00000561606 901 ntBASIC10.63□□□□□ -0.71
CKS1BP61024 PAM16-215ENST00000577031 548 ntTSL 4 BASIC10.63□□□□□ -0.71
CKS1BP61024 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC10.63□□□□□ -0.71
CKS1BP61024 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
CKS1BP61024 AL121912.1-201ENST00000603683 238 ntBASIC10.63□□□□□ -0.71
CKS1BP61024 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC10.63□□□□□ -0.71
CKS1BP61024 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC10.63□□□□□ -0.71
CKS1BP61024 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 ZNF142-205ENST00000449707 5909 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 PTGR2-205ENST00000555661 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
CKS1BP61024 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms