Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
PKNOX1P55347 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 AL645937.2-201ENST00000396808 931 ntBASIC14.79□□□□□ -0.04
PKNOX1P55347 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 CICP17-201ENST00000418553 2377 ntBASIC14.79□□□□□ -0.04
PKNOX1P55347 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.79□□□□□ -0.04
PKNOX1P55347 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.79□□□□□ -0.04
PKNOX1P55347 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.79□□□□□ -0.04
PKNOX1P55347 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.79□□□□□ -0.04
PKNOX1P55347 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.79□□□□□ -0.04
PKNOX1P55347 AC093525.8-201ENST00000624099 1342 ntBASIC14.79□□□□□ -0.04
PKNOX1P55347 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PKNOX1P55347 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.79□□□□□ -0.04
PKNOX1P55347 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
PKNOX1P55347 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.78□□□□□ -0.04
PKNOX1P55347 MIR943-201ENST00000401286 94 ntBASIC14.78□□□□□ -0.04
PKNOX1P55347 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.78□□□□□ -0.04
PKNOX1P55347 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.78□□□□□ -0.04
PKNOX1P55347 AC093028.1-201ENST00000622998 982 ntBASIC14.78□□□□□ -0.04
PKNOX1P55347 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 AC089987.1-201ENST00000551654 2209 ntBASIC14.78□□□□□ -0.04
PKNOX1P55347 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.78□□□□□ -0.04
PKNOX1P55347 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PKNOX1P55347 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.77□□□□□ -0.04
PKNOX1P55347 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.77□□□□□ -0.04
PKNOX1P55347 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
PKNOX1P55347 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.77□□□□□ -0.04
PKNOX1P55347 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
PKNOX1P55347 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.77□□□□□ -0.04
PKNOX1P55347 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PKNOX1P55347 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
PKNOX1P55347 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.77□□□□□ -0.04
PKNOX1P55347 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
PKNOX1P55347 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PKNOX1P55347 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms