Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCPP55072 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCPP55072 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 CICP11-201ENST00000434745 2827 ntBASIC16.12■□□□□ 0.17
VCPP55072 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
VCPP55072 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.12■□□□□ 0.17
VCPP55072 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 MTX1P1-201ENST00000440904 838 ntBASIC16.12■□□□□ 0.17
VCPP55072 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.12■□□□□ 0.17
VCPP55072 EEF1DP1-201ENST00000585891 896 ntBASIC16.12■□□□□ 0.17
VCPP55072 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
VCPP55072 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 FGD5P1-202ENST00000614866 2498 ntBASIC16.12■□□□□ 0.17
VCPP55072 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 AC007292.2-201ENST00000593524 1812 ntBASIC16.12■□□□□ 0.17
VCPP55072 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCPP55072 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VCPP55072 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VCPP55072 AJ011931.1-201ENST00000618749 2492 ntBASIC16.11■□□□□ 0.17
VCPP55072 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.11■□□□□ 0.17
VCPP55072 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC16.11■□□□□ 0.17
VCPP55072 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
VCPP55072 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.11■□□□□ 0.17
VCPP55072 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.11■□□□□ 0.17
VCPP55072 AL355334.1-201ENST00000417713 215 ntBASIC16.11■□□□□ 0.17
VCPP55072 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 RPL13AP25-201ENST00000484130 612 ntBASIC16.11■□□□□ 0.17
VCPP55072 FTLP10-202ENST00000505798 471 ntBASIC16.11■□□□□ 0.17
VCPP55072 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.11■□□□□ 0.17
VCPP55072 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
VCPP55072 AC000095.1-201ENST00000603208 874 ntBASIC16.11■□□□□ 0.17
VCPP55072 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.11■□□□□ 0.17
VCPP55072 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
VCPP55072 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.11■□□□□ 0.17
VCPP55072 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 WASH3P-207ENST00000560956 1394 ntBASIC16.11■□□□□ 0.17
VCPP55072 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.11■□□□□ 0.17
VCPP55072 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
VCPP55072 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.11■□□□□ 0.17
VCPP55072 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCPP55072 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms