Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.19□□□□□ -0.14
RFX3P48380 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.19□□□□□ -0.14
RFX3P48380 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.19□□□□□ -0.14
RFX3P48380 API5-211ENST00000534695 560 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.19□□□□□ -0.14
RFX3P48380 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 BRI3BPP1-201ENST00000594224 787 ntBASIC14.19□□□□□ -0.14
RFX3P48380 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.19□□□□□ -0.14
RFX3P48380 AC099568.2-201ENST00000609194 695 ntBASIC14.19□□□□□ -0.14
RFX3P48380 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.19□□□□□ -0.14
RFX3P48380 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 REXO1L5P-201ENST00000622260 2098 ntBASIC14.19□□□□□ -0.14
RFX3P48380 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.19□□□□□ -0.14
RFX3P48380 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.19□□□□□ -0.14
RFX3P48380 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
RFX3P48380 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.18□□□□□ -0.14
RFX3P48380 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 SOCS2P1-201ENST00000417727 557 ntBASIC14.18□□□□□ -0.14
RFX3P48380 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.18□□□□□ -0.14
RFX3P48380 AC026410.3-201ENST00000514280 936 ntBASIC14.18□□□□□ -0.14
RFX3P48380 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 AC092552.1-201ENST00000547243 906 ntBASIC14.18□□□□□ -0.14
RFX3P48380 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.18□□□□□ -0.14
RFX3P48380 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 AC133539.2-201ENST00000604757 467 ntBASIC14.18□□□□□ -0.14
RFX3P48380 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.18□□□□□ -0.14
RFX3P48380 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.18□□□□□ -0.14
RFX3P48380 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.18□□□□□ -0.14
RFX3P48380 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
RFX3P48380 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.18□□□□□ -0.14
RFX3P48380 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms