Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
HNF4AP41235 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.62□□□□□ -0.07
HNF4AP41235 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.62□□□□□ -0.07
HNF4AP41235 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 ENPP7P5-201ENST00000541031 1031 ntBASIC14.62□□□□□ -0.07
HNF4AP41235 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
HNF4AP41235 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.62□□□□□ -0.07
HNF4AP41235 AC015656.1-201ENST00000624209 3578 ntBASIC14.62□□□□□ -0.07
HNF4AP41235 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 AC139749.1-202ENST00000617529 3139 ntBASIC14.61□□□□□ -0.07
HNF4AP41235 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HNF4AP41235 LINC00552-201ENST00000625151 2579 ntBASIC14.61□□□□□ -0.07
HNF4AP41235 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 AC018529.2-202ENST00000611482 3087 ntBASIC14.61□□□□□ -0.07
HNF4AP41235 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HNF4AP41235 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.61□□□□□ -0.07
HNF4AP41235 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.61□□□□□ -0.07
HNF4AP41235 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.61□□□□□ -0.07
HNF4AP41235 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 AC022616.1-201ENST00000518688 554 ntBASIC14.61□□□□□ -0.07
HNF4AP41235 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
HNF4AP41235 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 DUX4L47-201ENST00000566374 394 ntBASIC14.61□□□□□ -0.07
HNF4AP41235 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.61□□□□□ -0.07
HNF4AP41235 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.61□□□□□ -0.07
HNF4AP41235 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
HNF4AP41235 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.61□□□□□ -0.07
HNF4AP41235 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
HNF4AP41235 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
HNF4AP41235 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 AC018665.1-201ENST00000622927 1362 ntBASIC14.6□□□□□ -0.07
HNF4AP41235 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
HNF4AP41235 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.6□□□□□ -0.07
HNF4AP41235 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HNF4AP41235 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms