Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
HOXC12P31275 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXC12P31275 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 AC012508.2-201ENST00000567613 1472 ntBASIC13.39□□□□□ -0.27
HOXC12P31275 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXC12P31275 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXC12P31275 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXC12P31275 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
HOXC12P31275 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXC12P31275 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
HOXC12P31275 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
HOXC12P31275 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 AL359183.1-201ENST00000623796 2132 ntBASIC13.39□□□□□ -0.27
HOXC12P31275 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.39□□□□□ -0.27
HOXC12P31275 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
HOXC12P31275 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC13.39□□□□□ -0.27
HOXC12P31275 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
HOXC12P31275 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
HOXC12P31275 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 C18orf15-201ENST00000623680 2534 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AC131212.3-201ENST00000624087 4219 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 ACTBP8-201ENST00000403258 1108 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HOXC12P31275 FTH1P14-201ENST00000482930 551 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXC12P31275 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXC12P31275 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXC12P31275 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HOXC12P31275 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXC12P31275 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.38□□□□□ -0.27
HOXC12P31275 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HOXC12P31275 AC009542.2-202ENST00000619004 1067 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
HOXC12P31275 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AC126365.1-201ENST00000578585 1514 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXC12P31275 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 KRT8P14-201ENST00000414254 1442 ntBASIC13.38□□□□□ -0.27
HOXC12P31275 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.38□□□□□ -0.27
HOXC12P31275 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.38□□□□□ -0.27
HOXC12P31275 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HOXC12P31275 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HOXC12P31275 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXC12P31275 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
HOXC12P31275 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC13.37□□□□□ -0.27
HOXC12P31275 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.37□□□□□ -0.27
HOXC12P31275 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
HOXC12P31275 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HOXC12P31275 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
HOXC12P31275 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
HOXC12P31275 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HOXC12P31275 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms