Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXC9P31274 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 AP000356.3-201ENST00000382243 753 ntBASIC19.56■□□□□ 0.72
HOXC9P31274 AL583805.1-201ENST00000391389 531 ntBASIC19.56■□□□□ 0.72
HOXC9P31274 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXC9P31274 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC19.56■□□□□ 0.72
HOXC9P31274 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 DNAJB1P1-201ENST00000429417 1024 ntBASIC19.56■□□□□ 0.72
HOXC9P31274 RPSAP15-201ENST00000448168 861 ntBASIC19.56■□□□□ 0.72
HOXC9P31274 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXC9P31274 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC9P31274 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC19.56■□□□□ 0.72
HOXC9P31274 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 AC005632.3-201ENST00000605544 308 ntBASIC19.56■□□□□ 0.72
HOXC9P31274 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HOXC9P31274 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 AC006504.5-208ENST00000588784 2401 ntBASIC19.56■□□□□ 0.72
HOXC9P31274 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
HOXC9P31274 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC9P31274 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC9P31274 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC9P31274 AL109954.1-202ENST00000564051 2148 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC9P31274 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HOXC9P31274 AL512430.1-201ENST00000392575 860 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC9P31274 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC9P31274 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC9P31274 KRT8P31-201ENST00000504812 1408 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
HOXC9P31274 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC9P31274 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC9P31274 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC9P31274 MIR4750-201ENST00000584564 56 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.55■□□□□ 0.72
HOXC9P31274 SIGLEC18P-201ENST00000602271 909 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 AC007881.3-201ENST00000608897 607 ntBASIC19.55■□□□□ 0.72
HOXC9P31274 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
HOXC9P31274 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC9P31274 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC9P31274 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC9P31274 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC9P31274 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC9P31274 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC9P31274 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC9P31274 RPS9P1-201ENST00000419943 583 ntBASIC19.54■□□□□ 0.72
HOXC9P31274 DUTP3-201ENST00000450025 415 ntBASIC19.54■□□□□ 0.72
HOXC9P31274 AC135983.4-201ENST00000564116 1262 ntBASIC19.54■□□□□ 0.72
HOXC9P31274 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
HOXC9P31274 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC9P31274 MIR4522-201ENST00000584932 87 ntBASIC19.54■□□□□ 0.72
HOXC9P31274 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.54■□□□□ 0.72
HOXC9P31274 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
HOXC9P31274 WT1-AS_6.1-201ENST00000614919 121 ntBASIC19.54■□□□□ 0.72
HOXC9P31274 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC9P31274 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HOXC9P31274 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC9P31274 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms