Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.09■□□□□ 0.33
SMARCA1P28370 BRWD1P1-201ENST00000401091 371 ntBASIC17.09■□□□□ 0.33
SMARCA1P28370 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 TUBB8P8-201ENST00000458717 1058 ntBASIC17.09■□□□□ 0.33
SMARCA1P28370 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.09■□□□□ 0.33
SMARCA1P28370 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC17.09■□□□□ 0.33
SMARCA1P28370 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.09■□□□□ 0.33
SMARCA1P28370 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 AC091271.1-201ENST00000611877 1162 ntBASIC17.09■□□□□ 0.33
SMARCA1P28370 AC005695.3-201ENST00000614522 232 ntBASIC17.09■□□□□ 0.33
SMARCA1P28370 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 AC009093.10-201ENST00000641956 1442 ntBASIC17.09■□□□□ 0.33
SMARCA1P28370 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.09■□□□□ 0.33
SMARCA1P28370 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SMARCA1P28370 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SMARCA1P28370 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.09■□□□□ 0.33
SMARCA1P28370 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SMARCA1P28370 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 AGGF1P1-201ENST00000509500 2073 ntBASIC17.08■□□□□ 0.33
SMARCA1P28370 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SMARCA1P28370 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SMARCA1P28370 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SMARCA1P28370 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
SMARCA1P28370 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMARCA1P28370 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.08■□□□□ 0.32
SMARCA1P28370 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.08■□□□□ 0.32
SMARCA1P28370 E2F3P2-201ENST00000447755 1422 ntBASIC17.08■□□□□ 0.32
SMARCA1P28370 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SMARCA1P28370 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SMARCA1P28370 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMARCA1P28370 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
SMARCA1P28370 TPT1P11-201ENST00000458482 498 ntBASIC17.08■□□□□ 0.32
SMARCA1P28370 AC092658.1-201ENST00000505836 891 ntBASIC17.08■□□□□ 0.32
SMARCA1P28370 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC17.08■□□□□ 0.32
SMARCA1P28370 AC104982.3-201ENST00000581995 514 ntBASIC17.08■□□□□ 0.32
SMARCA1P28370 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.08■□□□□ 0.32
SMARCA1P28370 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMARCA1P28370 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMARCA1P28370 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SMARCA1P28370 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.08■□□□□ 0.32
SMARCA1P28370 MTHFR-210ENST00000641407 2387 ntBASIC17.08■□□□□ 0.32
SMARCA1P28370 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SMARCA1P28370 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SMARCA1P28370 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.07■□□□□ 0.32
SMARCA1P28370 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SMARCA1P28370 CICP24-201ENST00000605464 2705 ntBASIC17.07■□□□□ 0.32
SMARCA1P28370 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SMARCA1P28370 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.07■□□□□ 0.32
SMARCA1P28370 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.07■□□□□ 0.32
SMARCA1P28370 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
SMARCA1P28370 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.07■□□□□ 0.32
SMARCA1P28370 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.07■□□□□ 0.32
SMARCA1P28370 AL157407.1-201ENST00000435784 904 ntBASIC17.07■□□□□ 0.32
SMARCA1P28370 AC012441.2-201ENST00000444843 739 ntBASIC17.07■□□□□ 0.32
SMARCA1P28370 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.07■□□□□ 0.32
SMARCA1P28370 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.07■□□□□ 0.32
SMARCA1P28370 AC108725.1-201ENST00000495472 409 ntBASIC17.07■□□□□ 0.32
SMARCA1P28370 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.07■□□□□ 0.32
SMARCA1P28370 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 AP000346.4-201ENST00000614827 381 ntBASIC17.07■□□□□ 0.32
SMARCA1P28370 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SMARCA1P28370 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms