Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 FAM45BP-202ENST00000592932 1624 ntBASIC12.78□□□□□ -0.36
USF1P22415 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.78□□□□□ -0.36
USF1P22415 AKR7A2P1-201ENST00000460134 915 ntBASIC12.78□□□□□ -0.36
USF1P22415 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.78□□□□□ -0.36
USF1P22415 RPSAP36-202ENST00000494591 1261 ntBASIC12.78□□□□□ -0.36
USF1P22415 AC004066.1-201ENST00000502488 802 ntBASIC12.78□□□□□ -0.36
USF1P22415 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 CYGB-203ENST00000589145 788 ntTSL 3 BASIC12.78□□□□□ -0.36
USF1P22415 AC020914.3-201ENST00000594712 304 ntBASIC12.78□□□□□ -0.36
USF1P22415 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.78□□□□□ -0.36
USF1P22415 PPA1-206ENST00000625364 644 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
USF1P22415 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 TNRC18P2-201ENST00000417666 2714 ntBASIC12.78□□□□□ -0.36
USF1P22415 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.78□□□□□ -0.36
USF1P22415 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
USF1P22415 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USF1P22415 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
USF1P22415 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
USF1P22415 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.77□□□□□ -0.36
USF1P22415 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
USF1P22415 TCAF2P1-201ENST00000291129 2421 ntBASIC12.77□□□□□ -0.37
USF1P22415 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 AL645937.2-201ENST00000396808 931 ntBASIC12.77□□□□□ -0.37
USF1P22415 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 KRTAP10-13P-201ENST00000412914 571 ntBASIC12.77□□□□□ -0.37
USF1P22415 PTPA-218ENST00000435132 618 ntTSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.77□□□□□ -0.37
USF1P22415 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.77□□□□□ -0.37
USF1P22415 AC091804.1-201ENST00000486888 567 ntBASIC12.77□□□□□ -0.37
USF1P22415 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 SCARNA20.5-201ENST00000516991 142 ntBASIC12.77□□□□□ -0.37
USF1P22415 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.77□□□□□ -0.37
USF1P22415 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.77□□□□□ -0.37
USF1P22415 DIO1-215ENST00000610607 796 ntTSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 AC090616.6-203ENST00000579186 1945 ntBASIC12.77□□□□□ -0.37
USF1P22415 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
USF1P22415 MFF-204ENST00000353339 2186 ntTSL 5 BASIC12.77□□□□□ -0.37
USF1P22415 AC138028.6-201ENST00000616106 1482 ntBASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms